PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g14360.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27442.6 Da    PI: 10.0898
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g14360.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF946.9e-303181151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Zjn_sc00003.1.g14360.1.sm.mkhc 31 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTRGKLYEFAS 81
                                    79***********************************************86 PP

2K-box50.49.9e-18100184690
                           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                                     ++++ +++ e+ + +++ L k++e L+  +R+llGe Le++s+ eL++Le +Leksl  +R +K + l+e+  +l+k +
  Zjn_sc00003.1.g14360.1.sm.mkhc 100 TNNTVQQDIEQIKADAEGLAKKLEALEAYKRKLLGERLEECSIDELHSLEVKLEKSLHIVRGRKVRKLKEEEMTLRKNN 178
                                     44467888999******************************************************************** PP

                           K-box  85 kelqee 90 
                                     ++l+e+
  Zjn_sc00003.1.g14360.1.sm.mkhc 179 EDLREK 184
                                     *99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.8192383IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-392382IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-3325106IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-312545IPR002100Transcription factor, MADS-box
CDDcd002652.89E-422597No hitNo description
PROSITE patternPS0035002579IPR002100Transcription factor, MADS-box
PfamPF003192.1E-263279IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-314560IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-316081IPR002100Transcription factor, MADS-box
PfamPF014862.9E-17105185IPR002487Transcription factor, K-box
PROSITE profilePS5129711.487108191IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009409Biological Processresponse to cold
GO:0009739Biological Processresponse to gibberellin
GO:0009838Biological Processabscission
GO:0009911Biological Processpositive regulation of flower development
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MARALPEKRQ TVRTQPMSCS HNMVRGKTQM KRIENPTSRQ VTFSKRRNGL LKKAFELSVL  60
CDAEVALIVF STRGKLYEFA SASVQKTVER YRTYTKDNVT NNTVQQDIEQ IKADAEGLAK  120
KLEALEAYKR KLLGERLEEC SIDELHSLEV KLEKSLHIVR GRKVRKLKEE EMTLRKNNED  180
LREKCKVQPQ LVAPLGVVAT QDKHPEKAGN DMDVETELFI GLPGRDNRPS KAAIAVGQSS  240
HA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3p57_J2e-192594271Myocyte-specific enhancer factor 2A
3p57_I2e-192594271Myocyte-specific enhancer factor 2A
3p57_D2e-192594271Myocyte-specific enhancer factor 2A
3p57_C2e-192594271Myocyte-specific enhancer factor 2A
3p57_B2e-192594271Myocyte-specific enhancer factor 2A
3p57_A2e-192594271Myocyte-specific enhancer factor 2A
3kov_J2e-192594271Myocyte-specific enhancer factor 2A
3kov_I2e-192594271Myocyte-specific enhancer factor 2A
3kov_B2e-192594271Myocyte-specific enhancer factor 2A
3kov_A2e-192594271Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00076ChIP-chipTransfer from AT2G45660Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0627981e-143BT062798.1 Zea mays full-length cDNA clone ZM_BFb0347K21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985920.11e-120PREDICTED: MADS-box transcription factor 50 isoform X2
RefseqXP_012698462.11e-120PREDICTED: MADS-box transcription factor 50 isoform X2
RefseqXP_004985919.11e-120PREDICTED: MADS-box transcription factor 50 isoform X2
SwissprotQ9XJ601e-114MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLQ9FR851e-115Q9FR85_MAIZE; M5 protein
STRINGGRMZM2G171365_P011e-114(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.38e-65AGAMOUS-like 42